2024/5/10 -All fastq files were then treated with AdapterRemoval [30] and subsequently aligned to the human reference genome GRCh38dh (http://ftp.1000genomes.ebi.ac.uk/ ...
2024/4/1 -In this TPM matrix, the rows represent the genes, and the columns represent the samples in that data set. Finally, we log-transformed and quantile normalized ...
2024/3/23 -Trimming Reads with Trimmomatic: ... Trimmomatic is used to remove low-quality bases and adapter sequences from raw reads, improving the overall quality of the ...
2024/4/10 -This guide describes the basic pipeline for Bulk RNA-seq analysis from raw fastq files to counts. We will be using software such as fastQC, trimmomatic, hisat2, ...
2024/3/22 -Trimming. Low-quality base reads and adapters were trimmed using Trimmomatic [35]with PE options. Trimmomatic runs with the following parameters in 24 threads:.
1日前 -Sequence reads were trimmed with the trimmomatic tool and default parameters ... (ftp)(http), TXT. SRA Run Selector Help. Raw data are available in SRA. | NLM ...
2024/4/17 -Read trimming: Following the quality control, the reads undergo trimming to eliminate low-quality bases and adapter sequences, employing Trimmomatic with ...
2024/4/22 -Bacterial Genome. Genome assembly: PacBio, Illumina and Illumina+PacBio hybrid data. In this tutorial we will learn to assemble a bacteria genome with long ...
11時間前 -Bacterial taxonomic annotation was performed by BLASTn against NCBI-NT database (Nucleotide collection, ftp ... Trimmomatic: a flexible trimmer for Illumina ...
2024/6/2 -... Trimmomatic, which can handle both paired-end and single-end Illumina sequencing. data. 14. Trimmomatic: With Trimmomatic, perform smooth read trimming into ...