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    • GSM5808409 - GEO Accession viewer

    1. https://www.ncbi.nlm.nih.gov
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    1. https://www.ncbi.nlm.nih.gov
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    2024/5/8 -For the RNA-seq reads of K562 EV, S1KO, S2KO and DKO, we first trimmed off adaptors by trimmomatic (0.38) using option ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 ...


    GEO Accession viewer - NCBI

    1. https://www.ncbi.nlm.nih.gov
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    1. https://www.ncbi.nlm.nih.gov
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    2024/5/7 -NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.


    Negligible effects of read trimming on the accuracy of germline ... - AWS

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    1. https://f1000research.s3.amazonaws.com
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    1. https://f1000research.s3.amazonaws.com
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    3日前 -2 (Chen et al., 2018), Trimmomatic (RRID:SCR_011848) v. ... GIAB FTP site: Raw whole-genome sequencing data for HG001. ... GIAB FTP site: Raw whole-genome ...


    Application of metagenomic next-generation sequencing in ...

    1. https://bmcinfectdis.biomedcentral.com
    2. articles
    1. https://bmcinfectdis.biomedcentral.com
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    12時間前 -The remaining high-quality sequencing data were compared with the microbial genome database [screened from NCBI (ftp://ftp ... Trimmomatic: a flexible trimmer for ...


    Linking CRISPR–Cas9 double-strand break profiles to gene editing ...

    1. https://www.nature.com
    2. nature biotechnology
    3. articles

    2024/5/13 -from phase three of the 1000 Genomes Project was downloaded from the EBI's FTP server (http://ftp ... Trimmomatic: a flexible trimmer for Illumina sequence data.


    Global Atlas of Methane Metabolism Marker Genes in Soil

    1. https://pubs.acs.org
    2. doi

    2024/5/14 -Here, we used 3419 metagenomes generated from georeferenced soil samples to examine the global patterns of methane metabolism marker gene abundances in soil, ...


    Mapping and functional characterization of structural ...

    1. https://genomebiology.biomedcentral.com
    2. articles
    1. https://genomebiology.biomedcentral.com
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    2024/5/7 -... Trimmomatic (v 0.39). BWA (v0.7.5a) mem was used to align clean reads against the pig reference genome Sscrofa11.1 downloaded from ENSEMBL ftp://ftp.ensembl ...


    Comparison of tools cutting primer sequences from reads with ...

    1. https://www.researchgate.net
    2. figure
    3. Comparison-of-to...

    2024/4/30 -Reads were trimmed using trim galore (version 0.6. ... 18 (with default parameters except -max-n 0) and Trimmomatic v0. ... The clean reads were mapped to the Mus ...


    Joint host-pathogen genomic analysis identifies hepatitis B virus mutations ...

    1. https://www.cell.com
    2. ajhg
    3. fulltext

    6日前 -... ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical ... Trimmomatic software (https://github.com ... Trimmomatic: a flexible trimmer for Illumina sequence data.


    ENSEMBL-ANNOTATION — Snakemake Wrappers tags/v1.19.1 ...

    1. https://snakemake-wrappers.readthedocs.io
    2. reference
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    1. https://snakemake-wrappers.readthedocs.io
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    6日前 -Download annotation of genomic sites (e.g. transcripts) from ENSEMBL FTP servers, and store them in a single .gtf or .gff3 file. Example¶. This wrapper can be ...