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  1. BLASTn output format 6 - Metagenomics
    BLASTn maps DNA against DNA, for example gene sequences against a reference genome blastn -query genes.fasta -subject genome.fasta -outfmt 6. BLASTn tabular output format 6. Column headers: qseqid sseqid pident length mismatch ...
    www.metagenomics.wiki/tools/blast/blastn-output-format-6
  2. blastとblast+ - aaikmyz's diary
    とりあえず自分が使うときのblast+の方のblastnのコマンドメモ。 blastn -query query. fasta -db yeast.nt -out result.out -evalue 0.01 -outfmt "7 qseqid sseqid length mismatch gapopen qstart qend sstart send evalue qseq sseq" ...
    mnmnm.hatenablog.com/entry/20110320/1300605293
  3. Blast - Formatting Output - Biostars
    Run blastn -help then look for the field called outfmt *** Formatting options -outfmt <String> alignment view options: 0 = pairwise, 1 = query-anchored showing identities, 2 = query-anchored no identities, 3 = flat ...
    www.biostars.org/p/88944/
  4. Display BLAST search results with custom output format - NCBI
    The –outfmt option permits formatting arbitrary fields from the BLAST tabular and comma-separated-value (CSV) formats. Use the –help option on the command- line application (e.g., blastn) to see the supported fields. The max_target_seqs ...
    www.ncbi.nlm.nih.gov/books/NBK279682/
  5. Appendices - BLAST® Command Line Applications User Manual ...
    To utilize this script, simply prefix it to the invocation of the C toolkit BLAST command line application and append the --path option pointing to the installation directory of the BLAST+ applications. For example, instead of using
    www.ncbi.nlm.nih.gov/books/NBK279684/
  6. BLAST Output Formats · seqan/lambda Wiki · GitHub
    ... this page on May 31, 2018 · 7 revisions. Currently three of the native BLAST output formats are supported: Description, legacy BLAST, BLAST+, lambda extension ... tabular, -m 8, -outfmt 6 .m8. tabular with comment lines, -m 9, -outfmt 7 .m9 ...
    github.com/seqan/lambda/wiki/BLAST-Output-Formats
  7. BLAST+ - Qiita
    未だに、 legacy blast を使って説明しているのが多いけど、個人使用においては、 blast+ を使わない意味が無いですよ。 ... BLASTDB -query INPUT -evalue 1e-10 - num_descriptions 1 -num_alignments 1 -out OUTPUT -outfmt 6 -dust ...
    qiita.com > Qiita > bioinformatics
  8. BLAST Command Line Applications User Manual
    For more details see “outfmt” in Appendix C as well as the cookbook. Custom output formats to extract BLAST database data blastdbcmd supports custom output formats to extract data from BLAST databases via the - outfmt command ...
    ecoevo.unit.oist.jp/site/wp-content/.../BLAST+_Manual.pdf
  9. Blast I/O — SeqAn master documentation - Read the Docs
    XML Blast output, -m 7, -outfmt 5. tabular, -m 8, -outfmt 6. tabular with comment lines, -m 9, -outfmt 7. Text ASN.1, -m 10, -outfmt 8. Binary ASN.1, -m 11, -outfmt 9. Comma-separated values, -outfmt 10. BLAST archive format (ASN.1), -outfmt 11 ...
    seqan.readthedocs.io/en/master/Tutorial/.../BlastIO.html
  10. BLAST Command Line Applications User Manual - Animal Genome ...
    blastdbcmd supports custom output formats to extract data from BLAST databases via the - outfmt command line option. For more details see the blastdbcmd options as well as the cookbook. 4.5.10 Improved software installation packages. The ...
    www.animalgenome.org/.../blast2.2.24/user_manual.pd...
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