... max_target_seqs 5 -num_threads 4 3. Make Nucleotide database makeblastdb -in db.fasta -dbtype nucl -out db 4. Do nucleotide to protein ...

YouTube-XploreBio

... parse_seqids Run query on blastp: blastp -query sequence.fasta -db DataBase -out output.txt -outfmt 6 -evalue 0.00001 -max_target_seqs 5.

YouTube-Danish

This video demonstrates how to use ncbi-blast+. the following commands are used in the video and the next video: makeblastdb: used to create ...

YouTube-Brian Salkas

During my PhD I saw the need for a tool which can assign accurate taxonomy to viral metagenomic sequences. Unlike bacterial DNA which can be ...

YouTube-Python Ireland

This video shows how to run blast through command line demonstrated by running blastp against swissprot database in ubuntu operating system.

YouTube-Bioinformatics4Everyone