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https://doi.org/10.7875/togotv.2021.004 本日の統合TVは、2020年12月2-4日に開催された第43回日本分子生物学会年会のフォーラム「生命科学の ...
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https://doi.org/10.7875/togotv.2022.021 本日の統合TVは、2022年1月20日に開催された統合データベース講習会:AJACSオンライン10から、大阪大学招聘 ...
PDBjを使ってタンパク質の立体構造データを見る @ AJACSオンライン10
1-1. PDBの収納情報について
1-2. PDBのファイルフォーマットについて
1-3. PDBデータの検索方法
2. 分子ビューアの使い方-MolMilを中心として
3. アミノ酸配列からの3Dモデリング
3-1. HOMCOSサーバを用いたホモロジーモデリング
3-2. AlphaFold2による予測について
高画質版はこちら http://togotv.dbcls.jp/20090228.html#p01 PDBj(Protein Data Bank Japan:日本蛋白質構造データバンク)は、 大阪大学蛋白質研究所 ...
This video includes a basic guide to Protein Data Bank and PDB data: asymmetric unit, biological assembly, chains, molecules, resolution, ...
YouTube-BioPandit
PDB files
Asymmetric Unit and Biological Assemblies
Downloading files
Coordinate file in PDB format Asymmetric unit will be downloaded
Understanding coordinate files
There is only one molecule in the asymmetric unit: Ubiquitin
If your camera captures 50 frames per second, the image will be less blurred.
The Protein Data Bank (PDB) is the single archive for biological macromolecules. The PDB is managed by the Worldwide PDB consortium of data ...
YouTube-WebsEdge Science
The origins of the PDB
How to use the RCSB PDB?
What is the PDB?
RCSB Data Centers
Curation at Rutgers
Data Declaration
Teaching resources
Molecule of the Month
Educational resources
Predicting protein structure
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YouTube-Bioinformatics with Dr. Mudasir
Introduction to Bioinformatics- Protein Data Bank (PDB) file Format (Part 3). 770 views · 4 years ago ...more ...
YouTube-Optimized eLearning
The PDB (Protein Data Bank) is an awesome (FREE) resource for viewing the atomic (or near-atomic) structures of molecules like proteins.
YouTube-the bumbling biochemist
Electron density map
BCL11A example
Protein Feature View
3D view of crystal structure
Unit cells
Asymmetric unit
Asymmetric unit contents
Biological Assembly
Unmodeled regions
Assessing model fit
PDB File format continued...
This video is about protein data bank (PDB). How to see structure, function and properties of proteins in PDB.
YouTube-Dr. Neeraj Kumar
YouTube-RCSBProteinDataBank
History of the Protein Data Bank
How does the RCSB PDB work?
Curation of data
Data curation
Educational resources and tutorials
Filmed in Paris on Nov 30th, 2012. More talks on http://dotconferences.eu Slides: http://fat.github.com/slides-os-guilt/
YouTube-dotconferences
Linux
Problem with Free Software
Sourceforge
Github
The Cute Puppy Syndrome
Puppy Metaphor
PHJ - THE CHRONIC. 972 views · 2 years ago ...more. trutru. 972. Subscribe. 51. Share. Save.
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