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This VMD demonstration shows how to download a PDB file online and how to create various visual representations. This video is in support of ...
YouTube-Vince Metzger
2013/05/03This online tutorial shows some of the techniques to create beautiful scientific figures using VMD 1.9.2 To download VMD 1.9.2 ...
YouTube-TCBG UIUC
2015/01/16Topic: VMD: Preparing, Analyzing, and Visualizing Molecular Dynamics Simulations Presenters: John Stone, University of Illinois ...
YouTube-SBGrid Consortium
2020/01/30動画の見どころ1/10枚目 Intro
動画の見どころ2/10枚目 High-End Visualization
動画の見どころ3/10枚目 Omnidirectional movies
動画の見どころ4/10枚目 Extending VMD
動画の見どころ5/10枚目 Cross-correlation analysis
動画の見どころ6/10枚目 Future performance
動画の見どころ7/10枚目 Workflow of structural systems biology
動画の見どころ8/10枚目 Building Membranes
動画の見どころ9/10枚目 Can VMD compete with NVMe or Lustre over InfiniBand?
動画の見どころ10/10枚目 What do we need?
This webinar takes a brief introductory overview of some of the basic features and capabilities of VMD for molecular visualization.
YouTube-WestDRI
2019/04/02This VMD demonstration shows how to download a PDB file online and how to create various visual representations. This video is in support of ...
YouTube-Vince Metzger
2013/04/19This video demonstrates the easy steps to follow if you want to make an image out of a frame of your simulation trajectory. VMD is a free ...
YouTube-Sayantan Mondal
2023/01/17brief tutorial on VMD molecular dynamics viewer.
YouTube-Scott Milner
2019/08/18動画の見どころ1/10枚目 Launching VMD
動画の見どころ2/10枚目 Loading a molecule
動画の見どころ3/10枚目 Orthographic View
動画の見どころ4/10枚目 Drawing molecules
動画の見どころ5/10枚目 Subset selection
動画の見どころ6/10枚目 Fixing spurious lines
動画の見どころ7/10枚目 Playing movies
動画の見どころ8/10枚目 Saving a rendered image
動画の見どころ9/10枚目 Renderer options
動画の見どころ10/10枚目 Saving snapshots/movies
This video explain who to use VMD movie maker. This plugin provides a complete solution for creating several simple rotation and trajectory ...
YouTube-Mohamed shehata
2021/03/28動画の見どころ1/10枚目 Intro
動画の見どころ2/10枚目 VMD movie maker
動画の見どころ3/10枚目 How to make a movie with VMD
動画の見どころ4/10枚目 Loading the trajectory
動画の見どころ5/10枚目 Aligning the trajectory
動画の見どころ6/10枚目 Zooming
動画の見どころ7/10枚目 Render settings
動画の見どころ8/10枚目 Smoothing the trajectory
動画の見どころ9/10枚目 Rendering
動画の見どころ10/10枚目 Converting the movie to MP4
In this one-hour webinar, we show some VMD (Visual Molecular Dynamics) features that go beyond the basics covered in our first VMD webinar.
YouTube-WestDRI
2020/11/16動画の見どころ1/10枚目 Speaker introduction
動画の見どころ2/10枚目 Changing graphical representations
動画の見どころ3/10枚目 Logic operators
動画の見どころ4/10枚目 Loading trajectory data
動画の見どころ5/10枚目 Mismatch between trajectory and topology
動画の見どころ6/10枚目 Using the movie maker
動画の見どころ7/10枚目 Bad use of trajectory smoothing
動画の見どころ8/10枚目 Logical commands to the console
動画の見どころ9/10枚目 User-defined movies
動画の見どころ10/10枚目 Conclusion
VMD is a powerful tool for analysis of structures and trajectories. Numerous tools for analysis are available under the VMD Main menu item ...
YouTube-Mohamed shehata
2019/03/17Demonstration of how to use Visual Molecular Dynamics (VMD) to visualise biomolecular structures from the protein data bank and from ...
YouTube-CCPBioSim
2020/10/16Visualizing Molecular Dynamics (VMD)
YouTube-Clemson Data Visualization Lab
2021/04/14動画の見どころ1/10枚目 What is VMD?
動画の見どころ2/10枚目 Specifying file type
動画の見どころ3/10枚目 Selecting atoms
動画の見どころ4/10枚目 Visualizing periodic structures
動画の見どころ5/10枚目 Colors
動画の見どころ6/10枚目 Analyzing frames
動画の見どころ7/10枚目 Creating representation
動画の見どころ8/10枚目 Computational analysis of protein structure
動画の見どころ9/10枚目 Radial distribution function (RDF)
動画の見どころ10/10枚目 Closing Remarks
This video is the second in a series entitled "Visualization programs". The series is aimed at providing introductions to the most widely ...
YouTube-Kamali Sripathi
2013/10/10動画の見どころ1/10枚目 Introduction to VMD
動画の見どころ2/10枚目 Opening a structure in VMD
動画の見どころ3/10枚目 Hiding the line representation
動画の見どころ4/10枚目 Changing drawing method
動画の見どころ5/10枚目 Zooming in on selection
動画の見どころ6/10枚目 VMD Shortcuts
動画の見どころ7/10枚目 Zooming
動画の見どころ8/10枚目 Measuring distances and angles
動画の見どころ9/10枚目 Measuring distances in VMD
動画の見どころ10/10枚目 Measuring distances
This video shows you how to minimize the energy of a protein and simulate its dynamics using the software VMD from the University of ...
YouTube-Troy Messina
2015/06/24動画の見どころ1/10枚目 Introduction
動画の見どころ2/10枚目 Calculating Center and Size of Structure
動画の見どころ3/10枚目 Setting parameters
動画の見どころ4/10枚目 Setting up a molecular dynamics simulation
動画の見どころ5/10枚目 Setting the Simulation Temperature
動画の見どころ6/10枚目 Defining Cells for Simulation
動画の見どころ7/10枚目 Fixing atoms for minimization
動画の見どころ8/10枚目 Setting the Timestep
動画の見どころ9/10枚目 TCL Forces
動画の見どころ10/10枚目 Conclusion
To interactively run any software on a supercomputer, one needs to enable X11 forwarding while connecting to remote resources using SSH, ...
YouTube-MDSim
2023/01/10An introduction to VMD crash course that includes tutorials for VMD , a program used widely in bioinformatics and computational chemistry.
YouTube-Mohamed shehata
2018/10/25This video tutorial will guide you to visualise, represent, manipulate and render images of a molecular structure obtained from the protein ...
YouTube-Shayon Bhattacharya
2020/10/08動画の見どころ1/10枚目 Introduction
動画の見どころ2/10枚目 Displaying crystal water molecules
動画の見どころ3/10枚目 Change representation of ligand
動画の見どころ4/10枚目 Saving the structure
動画の見どころ5/10枚目 Orthographic representation
動画の見どころ6/10枚目 Center of geometry calculation
動画の見どころ7/10枚目 Sequence Sphere
動画の見どころ8/10枚目 Adjusting graphics
動画の見どころ9/10枚目 Taking a picture with VMD
動画の見どころ10/10枚目 Aligning molecular structure
HOW to extract protein structure (frames) of a #GROMACS MD simulation using #VMD. 1.1K views · 1 year ago ...more ...
YouTube-Al1r3z4
2022/10/10VMD #NAMD -Commands: For NAMD" tar -zxvf NAMD_file.tar.gz cd NAMD_directory sudo su cp namd2 /usr/local/bin For VMD: tar -zxvf ...
YouTube-Bioinformatics and Computational Biology
2020/09/05Hello everyone, before watching this video, I request to watch the docking series videos so that you get this tutorial better.
YouTube-Know Biotech
2020/07/21