動画検索
関連広告
検索結果
Trimmomatic and it's use. For my undergraduate students.
YouTube-Loren Launen
2020/03/10Trimming fastq reads with Trimmomatic Credit by ___, 2017 This video is part of the DnA Lab short read sequencing workshop run every summer ...
YouTube-DnA lab short read sequencing workshop
2021/07/16Download the Bash Script and Ebook here: https://www.patreon.com/posts/84787384 Teaching(Video Conferencing): ...
YouTube-Bioinformatics Coach
2023/06/19For Bioinformatics and NGS Analysis services please contact farhan@jgiconsulting.pk visit: https://jgiconsulting.pk/overview/ #Adapater ...
YouTube-Farhan Haq
2022/03/18In this video, data is loaded via ftp URL and aligned to a built-in genome, hg38 ... Bioinformatics - Understanding Trimmomatic ... Paired-End Read ...
YouTube-profbiot
2021/02/03Running Trimmomatic on a cluster Credit by Daniel Ramirez, 2017 This video is part of the DnA Lab short read sequencing workshop run every ...
YouTube-DnA lab short read sequencing workshop
2021/07/16... ftp site http ... 1000 genome project ftp site http://ftp.1000genomes.ebi.ac.uk/vol1... ... Install Trimmomatic in Linux Macos using Conda-Mamba- ...
YouTube-Bioinformatics Clips
2022/02/06Galaxy Tutorial on Paired-End Read Trimming with Trimmomatic ... NCBI Minute: Download Genome Data via FTP. National Library of Medicine•23K views.
YouTube-Bioinformatics Coach
2021/08/16... ftp://igenome:G3nom3s4u@ussd-ftp.illumina.com/Mus_musculus/NCBI/build37.2/Mus_musculus_NCBI_build37.2.tar.gz Not a fan of doing plugs for ...
YouTube-Alex Soupir
2020/07/15Running Trimmomatic in Galaxy - This training was made for the in-house Galaxy instance at Sciensano. All functionality of the public ...
YouTube-Sciensano
2020/06/10... ftp site http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Install bcftools using anaconda https://youtu.be/BLhVqBXL_v4 Install ...
YouTube-Bioinformatics Coach
2021/12/26動画の見どころ1/10枚目 Intro
動画の見どころ2/10枚目 Getting started
動画の見どころ3/10枚目 Download example data
動画の見どころ4/10枚目 Create a working directory
動画の見どころ5/10枚目 Download the data
動画の見どころ6/10枚目 Indexing VCF files
動画の見どころ7/10枚目 Bcftools query
動画の見どころ8/10枚目 Query vcf files on remote server
動画の見どころ9/10枚目 Assigning a link to a variable
動画の見どころ10/10枚目 Conclusion
... ftp.sra.ebi.ac.uk/vol1/run/ERR333/ERR3335404 ... read 2 http://ftp.sra.ebi.ac.uk/vol1/run/ERR ... Bioinformatics - Understanding Trimmomatic.
YouTube-Bioinformatics Coach
2022/01/30動画の見どころ1/15枚目 intro
動画の見どころ2/15枚目 install tools using conda
動画の見どころ3/15枚目 download sequence reads using wget
動画の見どころ4/15枚目 download the reference genome using your browser
動画の見どころ5/15枚目 download the reference genome using python
動画の見どころ6/15枚目 trim the raw reads using sickle
動画の見どころ7/15枚目 index the reference genome using bwa index command
動画の見どころ8/15枚目 genome mapping using bwa
動画の見どころ9/15枚目 convert the sam file to bam file using samtools
動画の見どころ10/15枚目 sort the bam file using samtools
動画の見どころ11/15枚目 map and sort using a one liner command
動画の見どころ12/15枚目 get the mapping statistics using samtools
動画の見どころ13/15枚目 get the converage information for bases and calculate genotype likelyhoods
動画の見どころ14/15枚目 call variants using bcftools
動画の見どころ15/15枚目 post-vcf analysis using bcftools
... ftp site http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Install bcftools using anaconda https://youtu.be/BLhVqBXL_v4 Install ...
YouTube-Bioinformatics Coach
2022/02/06動画の見どころ1/10枚目 intro and pc requirement
動画の見どころ2/10枚目 download the example data
動画の見どころ3/10枚目 index the VCF file
動画の見どころ4/10枚目 get the list of chromosomes
動画の見どころ5/10枚目 save the chromosome list to an output file.
動画の見どころ6/10枚目 count the variants per chromosome
動画の見どころ7/10枚目 include chromosomes to count
動画の見どころ8/10枚目 exclude chromosomes
動画の見どころ9/10枚目 automate the counting process
動画の見どころ10/10枚目 create a bash script to count all variants per chromosome
... ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/478/105/GCF_001478105.1_Salmonella_enterica_CVM_N31384-SQ_v1.0/ isolate2: https://ftp.ncbi.nlm.nih ...
YouTube-Bioinformatics Coach
2023/04/27動画の見どころ1/12枚目 Intro
動画の見どころ2/12枚目 PC requirement
動画の見どころ3/12枚目 Install staramr
動画の見どころ4/12枚目 activate the environment
動画の見どころ5/12枚目 Test staramr
動画の見どころ6/12枚目 Create a working director and cd into it
動画の見どころ7/12枚目 Where to download the ebook
動画の見どころ8/12枚目 Download the example data
動画の見どころ9/12枚目 Run staramr
動画の見どころ10/12枚目 Dealing with pandas issue
動画の見どころ11/12枚目 Explore the output files
動画の見どころ12/12枚目 Validate result
Galaxy Tutorial on Paired-End Read Trimming with Trimmomatic ... How to Use FileZilla (FTP Tutorial). WPbasics•517K views · 6:58 · Go to ...
YouTube-Bioinformatics Coach
2022/11/05... 44K views · 21:43. Go to channel · NCBI Minute: Download Genome Data via FTP. National Library of Medicine•23K views · 8:31. Go to channel ...
YouTube-Bioinformatics Clips
2022/06/17... ftp site http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Install bcftools using anaconda https://youtu.be/BLhVqBXL_v4 Install ...
YouTube-Bioinformatics Coach
2021/12/27動画の見どころ1/10枚目 Intro
動画の見どころ2/10枚目 Bcftools index formats
動画の見どころ3/10枚目 Downloading example data
動画の見どころ4/10枚目 Downloading the data
動画の見どころ5/10枚目 Download using browser
動画の見どころ6/10枚目 Create working directory
動画の見どころ7/10枚目 Indexing vcfs
動画の見どころ8/10枚目 Indexing vcfs using csi format
動画の見どころ9/10枚目 Indexing VCF in tbi format
動画の見どころ10/10枚目 Conclusion
... ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ How to setup linux in windows: https://youtu.be/D3S6bIjWbDg Subscribe to my channels ...
YouTube-Bioinformatics Coach
2021/12/30動画の見どころ1/10枚目 Download the VCF file
動画の見どころ2/10枚目 Inverse strategy
動画の見どころ3/10枚目 VCF file format
動画の見どころ4/10枚目 How to identify metadata
動画の見どころ5/10枚目 Download the data
動画の見どころ6/10枚目 Download the VCF file using the command line
動画の見どころ7/10枚目 How to use grep command
動画の見どころ8/10枚目 Cat command to display contents of a file
動画の見どころ9/10枚目 Second approach
動画の見どころ10/10枚目 Conclusion
... ftp site http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Install bcftools anaconda: https://youtu.be/BLhVqBXL_v4 building from ...
YouTube-Bioinformatics Coach
2022/01/03動画の見どころ1/9枚目 intro
動画の見どころ2/9枚目 download the example data
動画の見どころ3/9枚目 display the chromosome names
動画の見どころ4/9枚目 save the chromosome names to an output text file
動画の見どころ5/9枚目 remove duplicate names
動画の見どころ6/9枚目 count the number of chromosomes
動画の見どころ7/9枚目 count the total number of variants
動画の見どころ8/9枚目 subset chromosome list
動画の見どころ9/9枚目 check for the absence and presence of chromosomes
Bioinformatics - Understanding Trimmomatic. Alex Soupir•15K views · 24:44. Go to channel · Bioinformatics - fastp FastQ Preprocessing Tool ( ...
YouTube-Danny Nielsen
2018/02/06