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This tutorial shows you how to call variants in bacterial genomes using the tool snippy Support my work
YouTube-Bioinformatics Coach
intro
PC requirement
workflow
create conda environment and install tools
activate the conda environment and test the tools
Download the example data
sequence reads
reference genome
Trim the raw reads
Variant Calling using fastq files
Post vcf analysis
Variant Calling using contigs
This movie explains how easy it is to perform a full wgSNP analysis in BioNumerics. In this workflow, the mapping of the reads to the reference sequence is ...
BIONUMERICS-BioNumerics